rs239104611 SNP Detail

Summary

• ID
  rs239104611
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41443900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGAAGAG TCTGTAAACA
  GAAGGCAGGG TGAAAAGTTG ATGGATTCTA CAGGGCTCTG CAACTTTCAC ACTCGCTTTT
  GGTCAAGCGC GATACCAAGA ATTCCCTTAG GAGCTGTGTT TCTCTGTGAA GGCTCTCGGT
  AGTAACAGCA GAAAGTCAAC ATGAAACCCT TGTGGATACA GTTTGTCACT AGATAAGAGC
  C
  ACACTGTTCA GGGACAGCTA GAAGCCTTTC TCCTGTAGGA TACATGCAGA TGTAGCTCGT
  GTATGCATAG AGAGAGGAGC ACGGATTAAT GGCGATCTAT AAATGCCATG CATGGAGGGT
  GCACTTTCTA TTCATGCTTT TGCTTTTCAC GAAGGAGTTG TTGTCCGTAG GGCTCAACTT
  TTAACCTGTC AGGAAAGCTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ
ss377341379	MGP_WTSI_9_41340687	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ
rs239104611					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377341379	MGP_WTSI_9_41340687	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41443900 () rs orientation: forward

Symbol	Name	Function Class
Gm48742	predicted gene, 48742	517 bp upstream
Mir100	microRNA 100	1100 bp downstream
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677056	regulatory region 677056	within coordinates
Rr677057	regulatory region 677057	252 bp proximal
Tssr84510	transcription start site region 84510	1105 bp downstream
Tssr84511	transcription start site region 84511	583 bp downstream