rs239116517 SNP Detail

Summary

• ID
  rs239116517
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103219354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACGGTG ATGCGCGCCA
  CCCGCCGGAA CTTGGCGTCC GCCTGAGCGT CGCGCCCGAT GGTGTAGGAG CCGCGGTAGC
  CGATGGTGAT GTAGCCGGAG CGCCGGCTGC CGTCCAAAGA CTGGGACGGC GTGAGCAGGG
  GCCCCGCCGC GCCCCCGGAC GGGCTGCGGC TAGCCAGCTC CAGCGTGGGC GAAGGCGCCC
  S
  GGCCGAGGCG CCCTCCTGCG GCTCGGGCTC TGCGTAGCCC AGCGGCAGCA GCTCATCGCC
  CAGAGAGCCC TCCTTGTGCA CCCCGCGGCG CGAGTGCGGC GGCGGTGGCC CCGGACCGGG
  TTGCTGGGGC GCCCCGAGGC GACGCACGAG CTCCGGCAGC TCGAAGTACT CGGCCTCGCG
  CTGCAGCCGG CTGCGCTCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss392294240	MGP_WTSI_14_103381135	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs239116517					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392294240	MGP_WTSI_14_103381135	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103219354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6810	CpG island 6810	within coordinates
Kctd12	potassium channel tetramerisation domain containing 12	within coordinates
Mir5130	microRNA 5130	631 bp downstream
Rr404260	regulatory region 404260	1283 bp upstream
Rr496945	regulatory region 496945	1757 bp distal
Rr496946	regulatory region 496946	345 bp distal
Rr496947	regulatory region 496947	168 bp distal
Rr496948	regulatory region 496948	5 bp proximal
Rr496949	regulatory region 496949	709 bp proximal
Tssr126949	transcription start site region 126949	1791 bp downstream
Tssr126950	transcription start site region 126950	592 bp downstream
Tssr126951	transcription start site region 126951	526 bp downstream
Tssr126952	transcription start site region 126952	448 bp downstream
Tssr126953	transcription start site region 126953	1009 bp upstream
Tssr130060	transcription start site region 130060	1395 bp upstream
Tssr130061	transcription start site region 130061	457 bp upstream
Tssr130062	transcription start site region 130062	712 bp downstream
Tssr130063	transcription start site region 130063	777 bp downstream