rs239118304 SNP Detail

Summary

• ID
  rs239118304
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:72835404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCTGTCCA GTTGTCATGG ATACTGAGAT
  TTTTATAAGG AAAGGGGTAA AGGGTTTTCC TTTATGCTTT AAAAAAAACC GGTGTCTTTT
  CATTTGCTTG GCCTGTATCC TTGCTCTGGG TTAGGGACCT TCCGTTCAGA GCCTTACTGG
  R
  ACCAAACAAG CAACTAGGTG ACCTTCTGGA CACCAGCTCT GATGTCAGTT ATGTGTAAAG
  CCAGGCAGAT GGGTCCAGAT AGTCCTGGAG ATTTCCACCT ACTGAAATGT TTCCATACTT
  AATTTCTACT CAGAGAACCT GAAGTCACTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322258978	CHEV_7_80330542	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239118304					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:72835404 () rs orientation: forward

Symbol	Name	Function Class
Gm20083	predicted gene, 20083	within coordinates
Gm28746	predicted gene 28746	263 bp upstream
Rr648885	regulatory region 648885	1702 bp distal
Rr648886	regulatory region 648886	1492 bp distal
Rr648887	regulatory region 648887	274 bp distal
Rr648888	regulatory region 648888	41 bp distal
Rr648889	regulatory region 648889	within coordinates
Rr648890	regulatory region 648890	854 bp proximal
Tssr67187	transcription start site region 67187	110 bp upstream
Tssr67188	transcription start site region 67188	142 bp upstream