rs239119067 SNP Detail

Summary

• ID
  rs239119067
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162396824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATG ACATGTCCAT TGTAGCTCTA
  Y
  TATCGTATTT CCTTATGCTG TTAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320082936	CHEV_1_164499386	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239119067					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162396824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi932	CpG island 932	1007 bp proximal
Rr396472	regulatory region 396472	1149 bp upstream
Rr396473	regulatory region 396473	1887 bp upstream
Rr421988	regulatory region 421988	770 bp proximal
Rr421989	regulatory region 421989	1261 bp proximal
Rr421990	regulatory region 421990	1339 bp proximal
Rr421991	regulatory region 421991	1982 bp proximal
Tssr9715	transcription start site region 9715	1342 bp upstream
Tssr9716	transcription start site region 9716	1412 bp upstream
Tssr9717	transcription start site region 9717	1432 bp upstream
Tssr14622	transcription start site region 14622	1027 bp downstream
Vamp4	vesicle-associated membrane protein 4	1260 bp upstream