rs239126056 SNP Detail

Summary

• ID
  rs239126056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13303351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGGGTA TTACCATCAC
  ACTGTGTCGA GAAAAGACAC ACGGCGCTTG TATATGGGCG CGTCTCTGAA ATCCAGGTAA
  CATTTTGTTG ATTTTAGCTC CTTAGGAAAC AAGCTTTGTT CTTCCATGTC CAAAACTCTT
  CCTTAGACAA TTTACTCATA AATTACGCCC AAACTGGATC GCTCGGACAG ACAGCTCAAC
  Y
  TTAATTATTT GGATCGGAGA TGCCACCCCC AAACAATGTT ATCTCAGTGG GCCCACATTT
  CAAGCTCTTC TTTATAGACT TAGAATAAGA TGCTCAGCCT CTGCAGTGCA CCTATGTCTG
  TCTGTGCTTT GTCTCCCCCA CCCCTGCCCC GCCCTGCAGA GCAGCTCCTA GAGGGTTGCT
  CACCTAACAC AGAGACAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505538	CHEV_8_13253351	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239126056					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13303351 () rs orientation: forward

Symbol	Name	Function Class
Adprhl1	ADP-ribosylhydrolase like 1	within coordinates
Rr175514	regulatory region 175514	650 bp proximal
Rr186316	regulatory region 186316	within coordinates
Tssr80430	transcription start site region 80430	681 bp downstream
Tssr80431	transcription start site region 80431	717 bp downstream
Tssr80432	transcription start site region 80432	753 bp downstream
Tssr80433	transcription start site region 80433	770 bp downstream
Tssr80434	transcription start site region 80434	803 bp downstream
Tssr80435	transcription start site region 80435	825 bp downstream
Tssr80436	transcription start site region 80436	895 bp downstream