rs239130830 SNP Detail

Summary

• ID
  rs239130830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71064341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTACTG GGTGCAAAAG
  CCCGAGTTTG GACGCTGCTT GCTCTGTGCT GCGGTGCCAG CGCAACCTCT GCTCTCTCGG
  AGCCACGCTG GAAGGAGAGA GAGACGTCCG CCCTCACTAG ACCGCACCCT GGCGCCCGGT
  CGACCGCCGG GAGGTTCAGC GCAGCCCGCA GACTGTTCCC ACCGCTTGAG AACTTCTAAG
  Y
  TGCACCGATC CTGAGACAGG ATACACTTCT GATACGTGTT GGTCCCCCGC AAGACCGAGC
  CCTGTCGCCC AGCAGTACCC CATTCCACCC GACCTCGGAT CTTCAGCTCA GCGCCAAGCA
  CAGGGCTTAA TTCATCTTTT GCTGATTCCT ACCCAGCGTT GGTACAACTG CATAGAGTAG
  AGCAGTGTCA AAGTGACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375103136	MGP_WTSI_8_73135590	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239130830					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375103136	MGP_WTSI_8_73135590	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71064341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20476	CpG island 20476	1207 bp distal
Cpgi20477	CpG island 20477	within coordinates
Gm45546	predicted gene 45546	within coordinates
Gm63790	predicted gene, 63790	835 bp downstream
Rr400904	regulatory region 400904	546 bp downstream
Rr400905	regulatory region 400905	192 bp upstream
Rr664836	regulatory region 664836	1288 bp distal
Rr664837	regulatory region 664837	within coordinates
Rr664838	regulatory region 664838	741 bp distal
Rr664839	regulatory region 664839	61 bp distal
Rr664840	regulatory region 664840	448 bp proximal
Tssr77777	transcription start site region 77777	1279 bp downstream
Tssr77778	transcription start site region 77778	973 bp downstream