rs239133925 SNP Detail

Summary

• ID
  rs239133925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87196043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCCCAA ACCCCACCCC
  ACCCCCACCC CAGGTGACTT ACTACATCTT GAATTATAAG CCAAAATAAA CCACTCTTCT
  TTAGACTGCC TTTGTTGGGG CATTTTATCA TAGCAGCAGG AAAAGAAACT AAAATGATAT
  ATAAGAAAAA AAAATAATAA TAGATGTAGG GTAAGATTCC AGCTGGGTGA TGGTGATGCA
  Y
  GCCTTTAATC CCAGCACTCG GGAGGTAGAG GCAAGCGGAT TTCTGAGTTC GAGGCCAGCC
  TGATCTACAA AGTGAGTTCC AGGACAGCCG GGGCTATACA GAGAAACCCT GTCTCGAAAA
  AGCCAAAAAA AAAAAAATTC TGTTTCCTGC TGAAGGGCCA TGGGGTGTCG CGCCCACCTC
  AGCCAGCAAG GAAGACACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386776156	MGP_WTSI_12_88490219	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239133925					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386776156	MGP_WTSI_12_88490219	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87196043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	877 bp distal
Gm6566	predicted gene 6566	206 bp downstream
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	within coordinates
Pomt2	protein-O-mannosyltransferase 2	1301 bp upstream
Rr403429	regulatory region 403429	1989 bp downstream
Rr403430	regulatory region 403430	1446 bp downstream
Rr470323	regulatory region 470323	1487 bp distal
Rr470324	regulatory region 470324	1763 bp distal
Rr470325	regulatory region 470325	877 bp distal
Tssr114507	transcription start site region 114507	1486 bp downstream
Tssr114508	transcription start site region 114508	1477 bp downstream
Tssr114509	transcription start site region 114509	1272 bp downstream
Tssr117156	transcription start site region 117156	1793 bp upstream
Tssr117157	transcription start site region 117157	1774 bp upstream
Tssr117158	transcription start site region 117158	1361 bp upstream