rs239136049 SNP Detail

Summary

• ID
  rs239136049
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178165419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCGGCTG GAGATGGCTG
  AGTGCTGCTG CAGAACGGAC CCGCCTGGTG TCGAACGGCG CCAATTCCTT TCACCGAGTT
  CGCGAGGCAA GACGCGGAGA CTCGCCCGGC GCGAGCGAGC ACGCAACGTC CTCTCGCAGG
  GGCGGCGCCG CGCACGTAAT ATAGGCGCCC CGCCCCCTGC CGAGGCGAGG CCCGCTAGAG
  M
  GGCTGCGCGC GCAGGCCCCG CCCCGCCCCC ACTGCGCGAC CTCCGCGCTG GGCCGGACCG
  CGCAAATGGA GGCTCTTAGA AGCCACCTTT CGGTTAAACG GACCCGCCGC AGTGGCCGCC
  GGCCTTTCCG GCTCTTGAGC CGCCGCGCTC CACCGGCGCT CTGCCTTCTG TGTCCTGGCG
  GAGGCTCTCC TCCACCCGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352535479	MGP_WTSI_1_180267985	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239136049					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352535479	MGP_WTSI_1_180267985	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178165419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	within coordinates
Gm38300	predicted gene, 38300	1747 bp upstream
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	57 bp upstream
Rr29068	regulatory region 29068	within coordinates
Rr372516	regulatory region 372516	within coordinates
Tssr316	transcription start site region 316	767 bp upstream
Tssr317	transcription start site region 317	263 bp upstream
Tssr318	transcription start site region 318	38 bp upstream
Tssr10384	transcription start site region 10384	1931 bp downstream
Tssr10385	transcription start site region 10385	1717 bp downstream
Tssr10386	transcription start site region 10386	1640 bp downstream
Tssr10387	transcription start site region 10387	676 bp downstream
Tssr10388	transcription start site region 10388	538 bp downstream
Tssr10389	transcription start site region 10389	16 bp upstream
Tssr10390	transcription start site region 10390	117 bp upstream
Tssr10391	transcription start site region 10391	340 bp upstream
Tssr15481	transcription start site region 15481	1761 bp upstream
Tssr15482	transcription start site region 15482	1690 bp upstream
Tssr15483	transcription start site region 15483	1446 bp upstream
Tssr15484	transcription start site region 15484	736 bp upstream
Tssr15485	transcription start site region 15485	682 bp upstream
Tssr15486	transcription start site region 15486	601 bp upstream
Tssr15487	transcription start site region 15487	535 bp upstream
Tssr15488	transcription start site region 15488	202 bp upstream
Tssr15489	transcription start site region 15489	160 bp upstream
Tssr15490	transcription start site region 15490	121 bp upstream
Tssr15491	transcription start site region 15491	93 bp upstream
Tssr15492	transcription start site region 15492	60 bp upstream