rs239140661 SNP Detail

Summary

• ID
  rs239140661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165467940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCTGGTC CAGGTGGGTC
  ACGCTCCTTC TTAGGGTTCC CATTGCTATG AAGAGACACC AGAACCAAGG CAGCTCTTAT
  AAAAGACACC ACTTAATTGA GGCTGGCTTA CAGGTTCAGA GGTTCAGTCC ATATTATCAT
  GGTGGGAGGC ATGGCAGCAT CCAGGCAGAC ACGGTGCTAG GGATGAAGCT GAGAGTTCTA
  Y
  GTCTTGATAT GCAAGCAGCA AGGAGAGACT GTGTTTAGAT GTAGCTTAAG CATATATGAC
  CTCAAAGCCC ACGCCCACAG TGACAAACTT CCTCCAACAA GGCCATACTT ACTCCAACAA
  GACCACACCT ACTCCAACAA GGCCACACAC CCTAATAGTG CTGCTCCCTG TGGGCCAAGC
  ATTCAAACAC ACAAGTCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320608494	CHEV_2_165451520	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239140661					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165467940 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	865 bp proximal
Rr569966	regulatory region 569966	1928 bp proximal