rs239144627 SNP Detail

Summary

• ID
  rs239144627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79437390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGATAG CACACTTGTG
  CTGTGGATGA CACAGCCAAC ACGTGTCAAT CAGACTAAAG CAGCTCACCA CTGATGTGAG
  CAGAGTCCGG CTGGTGGAGA GAGGGAAGAC ATGTTCAACT GGCTGCTGAC TGCTATGCTC
  CTCTGGATGG TACCAACAAA GCTGGTATCA ACTGAGTGCA GCTAGAACAT TCTGAATACA
  Y
  GTATGTTTCG ACCATAAAGG CATTTTTACT GCACAAAACT CAAATACAGA AAATGTATCT
  TTAATCCTTT CAAGCACTAG GAACAAAAAA TTTTAAAAAG TTAAAGGGGG GAAAAAAAAC
  CAGGTTGCAA AGCATTCTGA TATTTAAAGT ATGTGAAAAT TATTAAAGTC ATAACAAAAG
  AAGTTTATTA AAAGTTTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358583864	MGP_WTSI_3_79334005	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239144627					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358583864	MGP_WTSI_3_79334005	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79437390 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	971 bp proximal
Rr375221	regulatory region 375221	1213 bp upstream
Rr578535	regulatory region 578535	1760 bp distal
Rr578536	regulatory region 578536	1439 bp distal
Rr578537	regulatory region 578537	45 bp distal
Rr578538	regulatory region 578538	1465 bp proximal
Tssr29582	transcription start site region 29582	113 bp downstream
Tssr29583	transcription start site region 29583	1927 bp upstream
Tssr33705	transcription start site region 33705	1576 bp downstream
Tssr33706	transcription start site region 33706	1594 bp downstream
Tssr33707	transcription start site region 33707	1612 bp downstream
Tssr33708	transcription start site region 33708	1634 bp downstream
Tssr33709	transcription start site region 33709	1654 bp downstream
Tssr33710	transcription start site region 33710	1675 bp downstream
Tssr33711	transcription start site region 33711	1710 bp downstream
Tssr33712	transcription start site region 33712	1748 bp downstream
Tssr33713	transcription start site region 33713	1791 bp downstream
Tssr33714	transcription start site region 33714	1977 bp downstream