rs239149596 SNP Detail

Summary

• ID
  rs239149596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:75825037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCTACA CAAAGAAACC
  CTGTCTTAAA GAAACAAAAC AAAACTCCAA GAAAAGAGAT TAGACAAAGG CCCAGCTGAG
  AACTGGGTCT CCATCCTCAT CCCTGGTCGA TCTCAAGCAA GCCCTACTCC AGGAGTTGTG
  GTTTCCTCAC CTGCAAAAGC ACATTAGCAA ACTCCATGGC ACATGGCTTA GCAAGGAGGA
  R
  CTCACCAATG CACAGTCAAG AAGAGAGAAC AGGCTGTAGG CTGCACAGCA GCCATACATT
  ATGTGTTATT TCAGAGGAAC AAACTAGTTC TCCTCATAGG GACACAAATA AGATCCTGAA
  GTCCTGATTC AGGACAGTGT TACTGGTGGG ATCCAAGTGA GGGCACAGGC AGGGGGCCAA
  CTAAACCTTT CACATCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375182958	MGP_WTSI_8_77622308	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239149596					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375182958	MGP_WTSI_8_77622308	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:75825037 () rs orientation: forward

Symbol	Name	Function Class
Hmox1	heme oxygenase 1	within coordinates
Tssr78049	transcription start site region 78049	1533 bp downstream
Tssr78050	transcription start site region 78050	1506 bp downstream
Tssr78051	transcription start site region 78051	1471 bp downstream
Tssr78052	transcription start site region 78052	1391 bp downstream
Tssr78053	transcription start site region 78053	1332 bp downstream
Tssr78054	transcription start site region 78054	1306 bp downstream
Tssr78055	transcription start site region 78055	1268 bp downstream
Tssr78056	transcription start site region 78056	1237 bp downstream
Tssr78057	transcription start site region 78057	1195 bp downstream
Tssr78058	transcription start site region 78058	1185 bp downstream
Tssr78059	transcription start site region 78059	1178 bp downstream
Tssr78060	transcription start site region 78060	1164 bp downstream
Tssr78061	transcription start site region 78061	1091 bp downstream
Tssr78062	transcription start site region 78062	348 bp upstream
Tssr78063	transcription start site region 78063	1468 bp upstream
Tssr78064	transcription start site region 78064	1498 bp upstream
Tssr78065	transcription start site region 78065	1547 bp upstream
Tssr78066	transcription start site region 78066	1597 bp upstream
Tssr78067	transcription start site region 78067	1627 bp upstream
Tssr78068	transcription start site region 78068	1666 bp upstream
Tssr78069	transcription start site region 78069	1711 bp upstream
Tssr78070	transcription start site region 78070	1760 bp upstream
Tssr78071	transcription start site region 78071	1809 bp upstream
Tssr78072	transcription start site region 78072	1830 bp upstream
Tssr78073	transcription start site region 78073	1891 bp upstream
Tssr78074	transcription start site region 78074	1943 bp upstream
Tssr78075	transcription start site region 78075	1968 bp upstream
Tssr81818	transcription start site region 81818	1477 bp upstream
Tssr81819	transcription start site region 81819	424 bp downstream