rs239149897 SNP Detail

Summary

• ID
  rs239149897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:15780602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGT TGGAGGGGGA GGGGAAGGCA
  R
  AAAGAAAAGG AGGATTAGAG GCTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325723793	CHEV_19_15877728	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239149897					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:15780602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10648	CpG island 10648	985 bp distal
Gm50348	predicted gene, 50348	within coordinates
Gm54054	predicted gene, 54054	727 bp upstream
Rr406864	regulatory region 406864	within coordinates
Rr544631	regulatory region 544631	792 bp distal
Rr544632	regulatory region 544632	1180 bp distal
Rr544633	regulatory region 544633	170 bp distal
Rr544634	regulatory region 544634	within coordinates