rs239150870 SNP Detail

Summary

• ID
  rs239150870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20414332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCACCCT GTCTATGACC
  ATCTTAACAT ACAGTCATTT AGGATTTCAC TCACTCATGT GGTGTTCTGT GCGTTGTGAA
  ATAAAGGGGG TGGGAAAGAT CTCTCGCATC CCGCTGGAGC TCCAGGGCTC TGGGCAGGAG
  GACACAAGGC ACCACCGCAC ACTCTCCATG AAGCCTGGGT GGGCATCTGG CTGTGCGAAG
  Y
  CAAGGATCCC CAGTCTGCAG GGCGTGAAGA GGGAGCAGTC CCGGGTCCGT GGGTTTCACA
  GAAACCAGGG ACAACAGATT CTAGTTCTTG GGCATCACAG AATGTTACAG TATACCACAG
  AAGAGCTGAG AACGGGTGGG ACCCCAGGGG CTGTTAAGCC TGCCTAACAC CGAAGGGAAA
  AGAGGGCAGG GGGAGAAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325739992	CHEV_19_20511458	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239150870					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20414332 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	879 bp distal
Gm32689	predicted gene, 32689	1713 bp upstream
Gm41816	predicted gene, 41816	786 bp upstream
Rr356916	regulatory region 356916	1932 bp distal
Rr356917	regulatory region 356917	69 bp proximal
Rr361508	regulatory region 361508	82 bp proximal