rs239155411 SNP Detail

Summary

• ID
  rs239155411
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156045015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT TTGTTTCTAT TTGGTTGATT
  W
  CAGCCCTGAG TTTGATTGTT TCCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444075	CHEV_4_155334667	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239155411					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156045015 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	1760 bp upstream
Cpgi15495	CpG island 15495	1746 bp proximal
Gm68249	predicted gene, 68249	within coordinates
Rr606617	regulatory region 606617	826 bp distal
Rr606618	regulatory region 606618	1104 bp distal
Rr606619	regulatory region 606619	1270 bp proximal
Tssr40744	transcription start site region 40744	1734 bp upstream
Tssr40745	transcription start site region 40745	1784 bp upstream
Tssr40746	transcription start site region 40746	1853 bp upstream
Tssr40747	transcription start site region 40747	1983 bp upstream
Ube2j2	ubiquitin-conjugating enzyme E2J 2	954 bp downstream