rs239156818 SNP Detail

Summary

• ID
  rs239156818
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTGTTT TGGTAAAATC
  AACAAAAAAA ATTTCTCCAC CCAGAGGATG TGAAGATTAC AGAATAGGTA TCCGTGCTGT
  GGTACTGTAT AGAAAGTCAA GTTAGGACAA TCAAACTCAG GCTGGTCAGT GACTGACTAA
  ACGAGTGTTC TCAGATTCCA GAAGCCTGTT CTCATCGCAC AGGCAGTTTG TGGACCCCTT
  W
  CTTCTTCTTT GGCCCTTAGG CAAATTCCTC CCAATGGGAA GAGAATAAAT TGGAGGGGCT
  AGGGGAAATT TGGGAGGGCA GAACTAGTGT TTGGTATTTA ATGGGAAGAG GTTTGTGAGT
  CCCAAAAATA ACAGGGTCCT TAAGTGAGGT TTGTAAATCC CCAAAATAAC AGGATCAGAT
  TCAAGTGACT TCAATGAAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353668	CHEV_7_109399861	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239156818					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900554 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	363 bp distal
Rhog	ras homolog family member G	1229 bp upstream
Rr652562	regulatory region 652562	1270 bp distal
Rr652563	regulatory region 652563	734 bp distal
Rr652564	regulatory region 652564	405 bp distal
Tssr2354	transcription start site region 2354	1071 bp downstream
Tssr68328	transcription start site region 68328	1654 bp downstream
Tssr68329	transcription start site region 68329	1633 bp downstream
Tssr68330	transcription start site region 68330	1092 bp downstream
Tssr73939	transcription start site region 73939	1973 bp upstream
Tssr73940	transcription start site region 73940	1926 bp upstream
Tssr73941	transcription start site region 73941	1873 bp upstream
Tssr73942	transcription start site region 73942	1788 bp upstream
Tssr73943	transcription start site region 73943	1261 bp upstream
Tssr73944	transcription start site region 73944	1224 bp upstream
Tssr73945	transcription start site region 73945	1209 bp upstream
Tssr73946	transcription start site region 73946	1013 bp upstream
Tssr73947	transcription start site region 73947	868 bp upstream
Tssr73948	transcription start site region 73948	832 bp upstream
Tssr73949	transcription start site region 73949	799 bp upstream
Tssr73950	transcription start site region 73950	752 bp upstream