rs239164367 SNP Detail

Summary

• ID
  rs239164367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTATCA ACAGACACTT
  TTGAAGGTCT CTTTATACCT GATCTTGTTC TTAGTTCTTT CTGTAGGATA AGCAAAAACA
  CAAACTGAAG CAAGTGCCTA GATGTCTGTA AAGCTTCCTA GCTCTTGATC ACCGTAAACA
  AAGATTCTGT TTAAATAACA CTTGTGTCCC AAACTACTCT TCGAATCAGT TCTTGCATAA
  R
  GTCAAAGACT CTCCTACATT AAACAAGCCA TAGGTTGGAA TATGATTTTT CCAATAAGGA
  ATATGAAGAG AAACTCAGAC TTTTATTTTA TTTCGGTTTT TCAAGACAGG ATTTCGATGT
  GTCGCCCTGG CTGTCCTGGA ACTTACTCTG TAGACCAGGT GGGCCTCGAA CTCGAACTCA
  GAAATCCGCC TGCCTCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210087	MGP_WTSI_10_128182963	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239164367					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210087	MGP_WTSI_10_128182963	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581776 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1684 bp distal
Cpgi2419	CpG island 2419	1795 bp proximal
Dgka	diacylglycerol kinase, alpha	1052 bp upstream
Gm31504	predicted gene, 31504	25 bp downstream
Gm66065	predicted gene, 66065	62 bp downstream
Pym1	PYM homolog 1, exon junction complex associated factor	1982 bp upstream
Rr224483	regulatory region 224483	within coordinates
Rr224484	regulatory region 224484	1424 bp proximal
Rr385481	regulatory region 385481	1418 bp upstream
Rr402364	regulatory region 402364	958 bp downstream
Tssr96440	transcription start site region 96440	1085 bp downstream
Tssr96441	transcription start site region 96441	884 bp downstream
Tssr96442	transcription start site region 96442	673 bp downstream
Tssr96443	transcription start site region 96443	550 bp upstream
Tssr96444	transcription start site region 96444	1881 bp upstream
Tssr96445	transcription start site region 96445	1943 bp upstream
Tssr99942	transcription start site region 99942	1997 bp upstream
Tssr99943	transcription start site region 99943	1935 bp upstream
Tssr99944	transcription start site region 99944	1912 bp upstream
Tssr99945	transcription start site region 99945	1822 bp upstream
Tssr99946	transcription start site region 99946	1798 bp upstream
Tssr99947	transcription start site region 99947	1655 bp upstream
Tssr99948	transcription start site region 99948	1625 bp upstream
Tssr99949	transcription start site region 99949	1020 bp upstream
Tssr99950	transcription start site region 99950	849 bp upstream
Tssr99951	transcription start site region 99951	826 bp upstream
Tssr99952	transcription start site region 99952	822 bp upstream
Tssr99953	transcription start site region 99953	785 bp upstream
Tssr99954	transcription start site region 99954	441 bp upstream
Tssr99955	transcription start site region 99955	408 bp upstream
Tssr99956	transcription start site region 99956	326 bp downstream
Tssr99957	transcription start site region 99957	393 bp downstream
Tssr99958	transcription start site region 99958	1721 bp downstream
Tssr99959	transcription start site region 99959	1813 bp downstream