rs239174065 SNP Detail

Summary

• ID
  rs239174065
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30307723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAG AGTAGCTATC
  AGGCAGGCAG ACTCCTTTTG AAATGAGTGT CTCTGAAGAT GAATAGGGAA GGGACATTGG
  GGACCAGAAC CTATGTACTA GAGGGAAAAA ACAAACAACC AAACAACCTT AGGAAGGTTG
  TGGACATTTT TGAGTTACAC AGACTATATG GCAAGTCACC ATATGTGTCC TTTAGTAGAC
  D
  GAAATTGAGC CACCCGGGGC TCAGTAAGAG TGCCTGCTGC CAAGTCTGGC AGCCTAAGTT
  CCATCCTGGG AACCCACGCG TGGGAGAATG GAACTGACTT GAATGTTGTC CTCTGACCTC
  CACTCACATG CTGTGTGTGG CACACACACA CACATACATA CATAATTTTA AAATAATTTA
  AAATGAGGTT TATCAAACTT                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353515434	MGP_WTSI_2_30273231	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239174065					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353515434	MGP_WTSI_2_30273231	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30307723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11436	CpG island 11436	1032 bp distal
Ptpa	protein phosphatase 2 protein activator	within coordinates
Rr554313	regulatory region 554313	1559 bp distal
Rr554314	regulatory region 554314	within coordinates
Rr554315	regulatory region 554315	1336 bp proximal
Tssr17116	transcription start site region 17116	1634 bp downstream
Tssr17117	transcription start site region 17117	1621 bp downstream
Tssr17118	transcription start site region 17118	1564 bp downstream
Tssr17119	transcription start site region 17119	1490 bp downstream
Tssr23380	transcription start site region 23380	1937 bp upstream
Tssr23381	transcription start site region 23381	1666 bp upstream