rs239174270 SNP Detail

Summary

• ID
  rs239174270
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100310694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTATTA GATTCTTCTG
  TCTGGCTAGT TGAACCATTT CTTCTCTTGC TTGGCCTTAG CCACTGCATC CACAACGCCA
  AGTCACTCAC CGTCCAGCTT CGATCTCTGT TGCTCCGGTA CTGCACCAAG TATTGTAAAC
  AGCGTTCTTT AATATGTCTG CTTTTCCATC TCAGCTCTAG CTGGGATTCA CTCAGATTGC
  W
  GAGTGTTAGA TTTTCTGGAG CCCGTGGGAT CACTGGAGAT ATGTATGTGT GTGGTCATTG
  CCCTGGCCTA GACAAGTCAG GATCTTGGAG GTAATTCCCC TTATCCCTCC TCCCTTCCCC
  ATCCCAACCC CCCTATCTTC TCTTTTCTGC CCATGGCCAA CAATCTATAA ACTCCAGTGT
  CTTTAAGCTC CCTGCTCTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404177287	MGP_WTSI_X_98462427	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239174270					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404177287	MGP_WTSI_X_98462427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100310694 () rs orientation: forward

Symbol	Name	Function Class
Il2rg	interleukin 2 receptor, gamma chain	within coordinates
Rr692812	regulatory region 692812	1157 bp proximal
Tssr161640	transcription start site region 161640	185 bp downstream
Tssr163874	transcription start site region 163874	1642 bp upstream
Tssr163875	transcription start site region 163875	1412 bp upstream
Tssr163876	transcription start site region 163876	1357 bp upstream
Tssr163877	transcription start site region 163877	813 bp upstream
Tssr163878	transcription start site region 163878	284 bp upstream
Tssr163879	transcription start site region 163879	265 bp downstream
Tssr163880	transcription start site region 163880	1094 bp downstream
Tssr163881	transcription start site region 163881	1130 bp downstream