rs239182704 SNP Detail

Summary

• ID
  rs239182704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72196055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCATTCAA TAAGGGAAGC CGCTTATATT
  TTGCTTTCAT GGCAAAGGTA AAGATTAGCT AGCACCCACC AAATTCCTCA AACAGGAAAA
  GTAAAAGAAA GCAAACTAAG TTTTAAACCA ATGCTGCCAG TCGCTACCTG TAAGATGGTT
  R
  GATGGGATAG TTAATTCTTG AGCTGTGATG ATGAACTTAG CTATGAATTC ATTCATCGGA
  CATCATAAAC TTGTCTTAAC ATTCCATGTT CTTAAGATGC TTTCATGTAA TATCACTGTC
  ACGTCTCTGC AGGACCATAG GACACAGGGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342085	CHEV_2_72203768	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239182704					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72196055 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			138 bp proximal
Rr558962	regulatory region 558962			819 bp proximal
Tssr18337	transcription start site region 18337			695 bp downstream