rs239187972 SNP Detail

Summary

• ID
  rs239187972
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118492207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCGGGTT CAAGTGGCTG
  CCCTTTTACC CACTGAGCCA TCTTGCTGAC CTGACTCCAT CCTTGGTCAG GGTCCAGCAG
  TTATTTGGCT GCATAAGAAA GTACCATCTG ATATTAGTCA GTCCCCGATT TGTGAGCTTT
  CTATGGCTTC CATTTTTTCT GATCATAAAC AATACTAATA TATATGGAGA GAGAGAGAGA
  K
  ATCAGATTCG ATGTAGGCCT AGAATGCTTT ACATAGCCTA GGCTATCCTC AAACTAACAG
  TAACCCTCCT ACCTTAGCCC CCCCCCCTCC AGTGCTGGAA TTACAGGTGT GATCCACCAT
  AAATTTGCTT CTGACTTAAC TTGCTTCTGT CTGCTTTTAG AGCCTACGTG GACCGTTTAT
  AATTGTTTCC TCACGATGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355415020	MGP_WTSI_2_118487462	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239187972					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355415020	MGP_WTSI_2_118487462	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118492207 () rs orientation: forward

Symbol	Name	Function Class
1700008N17Rik	RIKEN cDNA 1700008N17 gene	1656 bp upstream
Cpgi12085	CpG island 12085	1494 bp proximal
Gm75659	predicted gene, 75659	within coordinates
Pak6	p21 (RAC1) activated kinase 6	1577 bp upstream
Rr55422	regulatory region 55422	1206 bp distal
Rr55423	regulatory region 55423	993 bp proximal
Rr373743	regulatory region 373743	1082 bp downstream
Tssr19565	transcription start site region 19565	1509 bp upstream
Tssr19566	transcription start site region 19566	1585 bp upstream
Tssr19567	transcription start site region 19567	1996 bp upstream