rs239192085 SNP Detail

Summary

• ID
  rs239192085
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:98621075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tggcctaag cttcgagcag atgtggatct
  ccatccttaA ACCAACAAAC ACTATCATGT TAGCTACAAC ATTTTCCAAG CTTTCATCTT
  GATGTCATAT TTTATACTTT CTTGAGGTGT TTTATGGTTT AAAATGCACG ATAGAAACTA
  W
  TTAAATGTCT TACACTGATT CACTATTTAC TAGTGATCTG AACTGACGAT CACTGACCAC
  GACTAAGTTC GGAGGTTATC AGATGGACAT GGCTCCCTGt tttttttttt tgttttttgt
  tttttggttt tttttttttG TGCTATCtct                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319867645	CHEV_1_100589927	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239192085					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:98621075 () rs orientation: forward

Symbol	Name	Function Class
Tssr8238	transcription start site region 8238	126 bp upstream