rs239193901 SNP Detail

Summary

• ID
  rs239193901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42311058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGTAAGG AGTGGTGGGT
  GGCAAGGACT GTGAATGCAC GTGTCTCGTG TGTGTCTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGCGCGCGCG CGCGCGCGCG GTGCGCGTGC GTCCGCGAGG
  CGTGGGGGGC CAGAGGAGCG CATCCCACCC CGCAACCCGC CCTCGCACTG GATGCCTTTT
  R
  GCCCCGCACC TGTGCTGGAA CGCCTGTCAC CCTCTGTCCC TCACGCCCCC ACTTCTTTTG
  TTCTTCAGTC ACACACACAC ACCTCATCCT GACCACTTAT AATTTCCTAG TGCAGAGTCA
  GACCCAAACC CAGAGAAGCC TTTGCCTGAC TGCTCCCCTC GCCCCCTCCC CCTCCTGCTA
  TAAATAGCTG GACTAGCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383143976	MGP_WTSI_11_42233733	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239193901					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383143976	MGP_WTSI_11_42233733	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42311058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2743	CpG island 2743	1378 bp distal
Cpgi2744	CpG island 2744	within coordinates
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	within coordinates
Gm34591	predicted gene, 34591	within coordinates
Rr445405	regulatory region 445405	464 bp distal
Rr445406	regulatory region 445406	629 bp proximal
Tssr100974	transcription start site region 100974	512 bp downstream
Tssr100975	transcription start site region 100975	446 bp downstream
Tssr100976	transcription start site region 100976	276 bp downstream
Tssr100977	transcription start site region 100977	206 bp upstream
Tssr100978	transcription start site region 100978	527 bp upstream
Tssr100979	transcription start site region 100979	598 bp upstream
Tssr100980	transcription start site region 100980	1002 bp upstream
Tssr100981	transcription start site region 100981	1027 bp upstream
Tssr100982	transcription start site region 100982	1054 bp upstream
Tssr100983	transcription start site region 100983	1091 bp upstream