rs239196910 SNP Detail

Summary

• ID
  rs239196910
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9617619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTAACCG GTGGCTTTTG TTTAATTGGC
  TTGGGTTTTA GATATTGTCA AAATATCTGG CATTCACTAT GGAACCAAGG CTGCCCTGGA
  ACTCAGGGCC AAGTGCTGAG ATTATAATCG AGCAGCAGAT TTCATGTTTA TTTCTGTCCT
  R
  GATGTTTTTC CCTGTTTCAT TGTCTTATTT TGTTCTTAAT AAACTTATCT TTGCATAATT
  AGTATTTGCA TTATTTTTGT AAGTTATTAA TAGCAATTCT AGAATTGAGG AAGGGGTGTT
  TTCTTTAAAG CAAGTTGGTC TGTCAGTTGC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319630700	CHEV_1_9537475	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239196910					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9617619 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	554 bp upstream
Cpgi23	CpG island 23	1155 bp distal
Rr395961	regulatory region 395961	1998 bp downstream
Rr407597	regulatory region 407597	1976 bp distal
Rr407599	regulatory region 407599	1812 bp distal
Rr407600	regulatory region 407600	847 bp distal
Rr407601	regulatory region 407601	1234 bp distal
Rr407602	regulatory region 407602	127 bp proximal
Rr407603	regulatory region 407603	565 bp proximal
Rr407604	regulatory region 407604	1772 bp proximal
Rrs1	ribosome biogenesis regulator 1	mRNA-UTR
Tssr5895	transcription start site region 5895	1915 bp downstream
Tssr5896	transcription start site region 5896	1899 bp downstream
Tssr5897	transcription start site region 5897	1406 bp downstream
Tssr5898	transcription start site region 5898	655 bp upstream
Tssr5899	transcription start site region 5899	720 bp upstream