rs239198838 SNP Detail

Summary

• ID
  rs239198838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151926360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAAAACAT AGGGTCTGTT CTGCCTTGCT
  TTTCAAGGGC CTCTTCCCTG ATGGGGTGTG GTCCAGACTG TGCAATAGGG CTCCCTGCAC
  GAGTAAATGT TCTGAGGGTC CTCAGAGAGC CTGCCGGCTC CTGGTGGCCC GTTGTTTCTC
  Y
  GCTCTGCCGG AAATAACCTT GCTGAGCGTT TGAGGGAAGT GTGAAAAATT GCTGAGCTGA
  CAGTTTTTCT CTCTCTCCCA GCATGTGTAA GTGTGCTGGG TAAACaagga gaaagaaggg
  agggggagat gaagagaaag agggatgtat                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320562102	CHEV_2_151910176	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239198838					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151926360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12435	CpG island 12435	1769 bp distal
Rr567277	regulatory region 567277	857 bp distal
Rr567278	regulatory region 567278	within coordinates
Rr567279	regulatory region 567279	1705 bp proximal
Scrt2	scratch family zinc finger 2	within coordinates