rs239199568 SNP Detail

Summary

• ID
  rs239199568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95162826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCGAGGA TAGCAGTACC
  TGGTCAATGT CTATGTGCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTTTCTC TCTTCCCTCT AGAAAGAGTT CAACAAAACT CTGTAGATTC
  TCTTCTCCCA TATTTTGTGC TGTGTGTTGG GTAAAGAAGA CATCCCCACT GCCTCTGAAC
  R
  TGACCTTATT TGGACACAGG GTGACTGCAG ACACTTAAGA TGAGGTTGTA GGGTGGGCCC
  AGTAAGACTT CTGCCCACTA ATAGAGGCGA TCAGCATATC CACATAGATA CCTCAGGAAG
  GCGGCCATCT TGGGGAGGCA GAGACTGCAA CTACAAGCTG AAAGACAAAA ATCCCAGCAA
  CCAAAGTGTC CCAATCGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375642210	MGP_WTSI_8_96960098	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239199568					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375642210	MGP_WTSI_8_96960098	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95162826 () rs orientation: forward

Symbol	Name	Function Class
9330175E14Rik	RIKEN cDNA 9330175E14 gene	1095 bp upstream
Cpgi20846	CpG island 20846	1617 bp distal
Nlrc5	NLR family, CARD domain containing 5	within coordinates
Rr401062	regulatory region 401062	1716 bp downstream
Rr667982	regulatory region 667982	1797 bp distal
Rr667983	regulatory region 667983	1498 bp distal
Tssr78863	transcription start site region 78863	1844 bp downstream
Tssr78864	transcription start site region 78864	1795 bp downstream
Tssr78865	transcription start site region 78865	1454 bp downstream
Tssr82496	transcription start site region 82496	1901 bp upstream