rs239199957 SNP Detail

Summary

• ID
  rs239199957
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25013980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATCACT TTTTTTTTTT
  TTTGAGGGAT TTGTTTATGT AACTAGCTTA CAAGCTAGCC TGCATCAGCC TCCCTTAGCC
  TGGAATTACA GGCAGGTACC AAGCTGAACG TAGGTATGAG AATTTTAATT AGTTACTCAA
  AGGCAATCAA ACCAATGTCA AAATTACCTC ACAAAAAAAC AGTCAGATGC TGTGGCACAT
  A
  CTATTCATCC CAATACTCAA GTAGCAGAGG CTGATCAATC TCTGTGAGAT CCAGGATGAC
  CTGGTCTACA TGTCAAGTTC TGGATAGAAC TTAAATAAAT AATAGAAAAT AAATAAATAA
  ATAAAACCAA ATAAATACGT TACAAAATAT TCTAATACCC AGGAGGGTGA GGAAAGCTTA
  CGGAGAAGTG GCTATGGAAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388016906	MGP_WTSI_13_24921866	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239199957					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388016906	MGP_WTSI_13_24921866	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25013980 () rs orientation: forward

Symbol	Name	Function Class
Acot13	acyl-CoA thioesterase 13	within coordinates
Cpgi5387	CpG island 5387	1114 bp proximal
Rr281160	regulatory region 281160	420 bp proximal
Rr403682	regulatory region 403682	1449 bp upstream
Tdp2	tyrosyl-DNA phosphodiesterase 2	1682 bp upstream
Tssr118970	transcription start site region 118970	1664 bp upstream
Tssr118971	transcription start site region 118971	1703 bp upstream
Tssr121812	transcription start site region 121812	1325 bp downstream
Tssr121813	transcription start site region 121813	1340 bp downstream
Tssr121814	transcription start site region 121814	1356 bp downstream
Tssr121815	transcription start site region 121815	1412 bp downstream
Tssr121816	transcription start site region 121816	1591 bp downstream