rs239200849 SNP Detail

Summary

• ID
  rs239200849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4107689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCGCGT ATAGATTCAA
  GAGAATCAAA GTCAGTATAG TAATAGCATC TATATGTCTT AGTTAGGGGT TTACTGCTGT
  GAACAGATAC CATGACCATG GCACCTCTTA TAAAGGACAA CATTTAATTG GGGTTGACTT
  ACAGGTTCAG AGGTTCAGTC CATTATAATC AAGGTGGGAA CATGGCAGCA TCCAGGCAGG
  Y
  ATGGTTCAGG AGTTGCTGAG AGTTCTCCAT CTTCATCTGA AGACTACTAG CAGAATACTG
  ACTTCTAGGC AGCTAGGATG AGGGTCTTAA AGTTCATGTT CATAGTGACA CACCTACTCC
  AACAGGGACA CACCTACTCC AACAGGAACA CACCTACTCC AACAGGGCCT TCTCCAACAC
  CTTCTAATAG TGCCACTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324212490	CHEV_13_4056935	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239200849					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4107689 () rs orientation: forward

Symbol	Name	Function Class
Akr1c14	aldo-keto reductase family 1, member C14	within coordinates
Rr387869	regulatory region 387869	1638 bp downstream
Rr474439	regulatory region 474439	1867 bp distal
Rr474440	regulatory region 474440	694 bp proximal
Rr474441	regulatory region 474441	1747 bp proximal
Tssr118214	transcription start site region 118214	1876 bp upstream
Tssr118215	transcription start site region 118215	1898 bp upstream
Tssr118216	transcription start site region 118216	1982 bp upstream