rs239205507 SNP Detail

Summary

• ID
  rs239205507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107667320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGCAAAG CGCTGCAGCC
  CCAGGAGCAG CTATTGAAAT ACCGCGGGCC TCAGCCGTAG CTTAGAAGCA GTAAGGAAGC
  CAGAACCCAG GGCCGAGAAG CCTGGGCAGC TGGCGAGAAG GGGCTGTCCG CTCCAAGTGG
  CCCCGCAGAG CCGCCTGCTG CTTGCTGCAG AGCTCCTGCC CCAGCCCGGC CCGGGCCCCG
  Y
  GCGCCACGGT TGCAGCTTAC CGAAGAAGGG CAGCGCCCCG CGGCGCCCCG CGCGGTCATA
  CGGGCAGCTG GGTCCCGGCA CGGCGTGTTG GCCGCCCTGG TTCGCTCGCT CCCTTGCTCG
  CTAGTGGCTG AAGAGCCCGC GCCCCGGTCG AGGGCCACGC CGCTGTCCTG GGATGCAGAG
  AGCCGCAGCG ACACCGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359151502	MGP_WTSI_3_107562922	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239205507					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359151502	MGP_WTSI_3_107562922	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107667320 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13681	CpG island 13681	within coordinates
Csf1	colony stimulating factor 1 (macrophage)	Intron
D3Mit104	DNA segment, Chr 3, Massachusetts Institute of Technology 104	477 bp distal
D3Mit104.1	DNA segment, Chr 3, Massachusetts Institute of Technology 104.1	367 bp proximal
D3Mit104.2	DNA segment, Chr 3, Massachusetts Institute of Technology 104.2	326 bp distal
D3Mit104.3	DNA segment, Chr 3, Massachusetts Institute of Technology 104.3	547 bp distal
Gm40121	predicted gene, 40121	within coordinates
Rr583041	regulatory region 583041	1836 bp distal
Rr583042	regulatory region 583042	within coordinates
Rr583043	regulatory region 583043	222 bp proximal
Tssr1014	transcription start site region 1014	168 bp downstream
Tssr1015	transcription start site region 1015	254 bp downstream
Tssr35085	transcription start site region 35085	183 bp downstream
Tssr35086	transcription start site region 35086	230 bp downstream