rs239206555 SNP Detail

Summary

• ID
  rs239206555
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98811358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGAGAGG GGAGAAGGAC
  CCGAGGCTCC AAGGCGTTCG GCTGTGCACT GTCTAGCTAA GGCAGTGCTC ATTCTTAACG
  CACAACTTGA GATAGGGTGG ACCGCGGCTT CCTCGGTAAA CTGGACGCCC AGCGGGCGCC
  GAGCAGCTAG CAAAGCGCAT CAGCCATTTT CCGAGCGTCT TTGGTAACCC TTCCGGAGAG
  S
  GCACGCCAGG AGGGGGAAGA AAAAAAAAAA AAAAGAAAGA AAGAGGCGGG CCTGCACCGG
  GGCCTCGGCC CAGAAGCCAC ACCCTCCGGG CTCGCCACCT CCCCATGCTA ACAAAACGGA
  AAGCGGAACC CTAACCTCGG CAGAGAAAGC GCGCACTGGA GCGCCAATGA GCTTGCAAAG
  AGCCGCTCCA GGGCGCCGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321222361	CHEV_4_98589812	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239206555					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98811358 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	within coordinates
Rr398351	regulatory region 398351	90 bp upstream
Rr595805	regulatory region 595805	802 bp distal
Rr595806	regulatory region 595806	199 bp proximal
Rr595807	regulatory region 595807	489 bp proximal
Rr595808	regulatory region 595808	769 bp proximal
Tssr37901	transcription start site region 37901	184 bp downstream
Tssr37902	transcription start site region 37902	538 bp upstream
Tssr37903	transcription start site region 37903	603 bp upstream
Tssr37904	transcription start site region 37904	630 bp upstream
Tssr37905	transcription start site region 37905	694 bp upstream
Tssr37906	transcription start site region 37906	724 bp upstream
Tssr37907	transcription start site region 37907	787 bp upstream
Usp1	ubiquitin specific peptidase 1	689 bp upstream