rs239208622 SNP Detail

Summary

• ID
  rs239208622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116386782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGTGTTG CCCATTTAAA
  TTGATTTTAA AATGCGTATT TGTCTAAAGG TGTTCAAATA TGGGGAAATG ATGGGCGTGG
  TGGAGCATGC TTTGAATATC AGCTCTCCAG AGGAAGGGCA GACAGAGCCA AAGGCCAGCC
  AGGGTGACCC TCAGACCCTC TCTCAGAATA GAGTACAGGA GAAAATACGC CAGGAACAAC
  R
  AGGCATGGCT TTAACAATTT AGAATGGGTC ATATTCACTA GCTTTGCAAC TTTTCTAAAT
  GCTAGTTACA GTCTTTTATG TTTTATGCAT TTAATTATAG GCACTGGGAG AAAAGCAAGG
  GAAACAATGT TGGCAGGTCT GCCCCACAGA TCCTATCAAC CTGGATGCAA CAGGATGGCC
  CAATTATTAA ATCCAGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895784	CHEV_3_116296051	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239208622					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116386782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	1343 bp proximal
Rr397965	regulatory region 397965	1630 bp upstream
Rr583746	regulatory region 583746	1317 bp proximal
Rr583747	regulatory region 583747	1614 bp proximal
Rr583748	regulatory region 583748	1695 bp proximal
Rr583749	regulatory region 583749	1888 bp proximal
Sass6	SAS-6 centriolar assembly protein	1849 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	1826 bp upstream
Tssr35316	transcription start site region 35316	1683 bp downstream
Tssr35317	transcription start site region 35317	1715 bp downstream