rs239211911 SNP Detail

Summary

• ID
  rs239211911
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:80863843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGTGCCGC CGCCGCCAGT
  ATGGGCTGCG CCCCGAGCAT CCACACTTCC GAAAACCGAA CGTTTAGCCA CAGCGACGGC
  GAGGACGAGG ACGTGGACGT GGACGTCCCG GGCCCCGCGC CGAGATCTAT TCAGCGATGG
  TCGACCGCGC CCGGGCTCGT GGAGCCTCAG CCTCGGGATA ACGGCGCCTC GAAGGTGAGC
  S
  GCACTGGGAG GGCGGGGAAA CAAACGCGGG GCACTGGGGG CCCTCTAGGC AGCCGCCCTG
  GCGTTGACCG ACGCCAGCCG CCCGCGTTTG CGGGCTGTCG CGGACCGAGG CTTAACAGGG
  CTATGACGCG GCGCCGCGGG ATCCGCCGTG TCCGTTCCTT CCCGGCCGGG GTCGGACGCG
  GCGAGTCAGT TTTCTCCCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372063458	MGP_WTSI_7_88358981	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239211911					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372063458	MGP_WTSI_7_88358981	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80863843 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700023D08Rik	RIKEN cDNA 1700023D08 gene			922 bp upstream
Gm73624	predicted gene, 73624			714 bp upstream
Pde8a	phosphodiesterase 8A			Intron
				Splice-Site
Rr650103	regulatory region 650103			725 bp distal
Rr650104	regulatory region 650104			885 bp distal
Rr650105	regulatory region 650105			489 bp distal
Tssr67494	transcription start site region 67494			811 bp downstream
Tssr67495	transcription start site region 67495			773 bp downstream
Tssr67496	transcription start site region 67496			753 bp downstream
Tssr67497	transcription start site region 67497			736 bp downstream
Tssr67498	transcription start site region 67498			599 bp downstream
Tssr67499	transcription start site region 67499			463 bp downstream
Tssr67500	transcription start site region 67500			332 bp downstream
Tssr67501	transcription start site region 67501			219 bp downstream
Tssr67502	transcription start site region 67502			29 bp downstream
Tssr73321	transcription start site region 73321			935 bp upstream
Tssr73322	transcription start site region 73322			882 bp upstream
Tssr73323	transcription start site region 73323			424 bp upstream
Tssr73324	transcription start site region 73324			415 bp upstream