rs239220189 SNP Detail

Summary

• ID
  rs239220189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61901265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGGCAC AGATAGAACC
  TGAGAAGGAG AGGCAGGGAG AGTCTTGAGA CGAGGGGAAG TTGCTCCCCA CAACCCCAGA
  ACCTTAGAAC CAGGTGGTAA AGTGCGGCCT CGGGTGTGGC TCTCACGTTG ATTACACTTG
  ACGTTAGATT TCCTATGATT CCCACATTTC CAGCTGCTCT GGAAGATCAA AAGATGAAAA
  Y
  GGGGTGGGGC TCACGTTCCT CCAAGGCCCA AGCTGGCCTG CTACCCTGTT CTGTGCACTC
  CAGTTTGCTC CAGCTAGTCA CTTGGTCTCA GCTTGGATTC CTCCAGGGAC AGGAGGCTCT
  CTGGTCCCAG GGACAGCTGA TTCATTCTGG CAAATTCTGG TAGAAAAGAC TTCCCCATGT
  GAAGTAACAA CCTGGTACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323330700	CHEV_10_61528234	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239220189					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61901265 () rs orientation: forward

Symbol	Name	Function Class
D10Mit149	DNA segment, Chr 10, Massachusetts Institute of Technology 149	1642 bp proximal
Tssr93687	transcription start site region 93687	1129 bp upstream