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rs239222610 SNP Detail
Summary
  • ID
    rs239222610
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr7:25421255 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTGGCTCTTC CTCGGTTACC
    TGAACTCAGC AAAGAAATGG TTATTTGATG AAGTATCAAC GGCTGACCCA CAGTAAAAAC
    AGACAAATTC TAAAAATTAA AAAAAAAAAA AAAAAAGCAT AATTACCAAA AAAAGTCAAT
    GCTTCCTCCC TCTGCAATTT GCTTCTTAAA CTTTTTTTTT TTTTAAAGTT TTTGAAAAAA
    W
    TTTTTTTTAA ATCCTGAAAA GTAGACAGAA AAACAGCTCC TGGAAGAATT TACAACCAAC
    TGCATGAGAG TCTGGGAAGC CAAGGGGCTA AAAAGCAGAG TAGGGAGGGG CAGACAGGCA
    AGGCTCCTCC CCAGTCACTG TGGCCTCACA AGGGAGGCTT CTTTAGCTAA GAAGGCAGGG
    GAGGAGGAAG TGGAGGGACA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss322122402 CHEV_7_26506849 CHEVERUD SCREENING_POP f SNP T A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs239222610 SNP T A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:25421255 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hnrnpul1 heterogeneous nuclear ribonucleoprotein U-like 1 within coordinates
Rr155556 regulatory region 155556 1255 bp distal
Rr155557 regulatory region 155557 1546 bp proximal
Rr160908 regulatory region 160908 1146 bp proximal
Rr170211 regulatory region 170211 within coordinates
Tssr65169 transcription start site region 65169 1055 bp upstream
Tssr71293 transcription start site region 71293 102 bp upstream
Tssr71294 transcription start site region 71294 1026 bp downstream
Tssr71295 transcription start site region 71295 1095 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory