rs239222610 SNP Detail

Summary

• ID
  rs239222610
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25421255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTCTTC CTCGGTTACC
  TGAACTCAGC AAAGAAATGG TTATTTGATG AAGTATCAAC GGCTGACCCA CAGTAAAAAC
  AGACAAATTC TAAAAATTAA AAAAAAAAAA AAAAAAGCAT AATTACCAAA AAAAGTCAAT
  GCTTCCTCCC TCTGCAATTT GCTTCTTAAA CTTTTTTTTT TTTTAAAGTT TTTGAAAAAA
  W
  TTTTTTTTAA ATCCTGAAAA GTAGACAGAA AAACAGCTCC TGGAAGAATT TACAACCAAC
  TGCATGAGAG TCTGGGAAGC CAAGGGGCTA AAAAGCAGAG TAGGGAGGGG CAGACAGGCA
  AGGCTCCTCC CCAGTCACTG TGGCCTCACA AGGGAGGCTT CTTTAGCTAA GAAGGCAGGG
  GAGGAGGAAG TGGAGGGACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322122402	CHEV_7_26506849	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239222610					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25421255 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpul1	heterogeneous nuclear ribonucleoprotein U-like 1	within coordinates
Rr155556	regulatory region 155556	1255 bp distal
Rr155557	regulatory region 155557	1546 bp proximal
Rr160908	regulatory region 160908	1146 bp proximal
Rr170211	regulatory region 170211	within coordinates
Tssr65169	transcription start site region 65169	1055 bp upstream
Tssr71293	transcription start site region 71293	102 bp upstream
Tssr71294	transcription start site region 71294	1026 bp downstream
Tssr71295	transcription start site region 71295	1095 bp downstream