rs239223809 SNP Detail

Summary

• ID
  rs239223809
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126293922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTTGGA AGAATAGATT
  GTACAGAGGT TAGAAGCTTC CAGGGGTAGG CCTAGGGATA GTTAGAACAG AGAAAGAAAC
  GCTCTGGCTC AGCCCAAGCC ATATATTCAC ACAGCTTGGG TACGGCTCTC CTCTCACCCC
  TTCATCTGAG GAGATGAAAG CACATTCACA TGGAAGTGTA AGCCAAATAA ACGCGTTCCT
  M
  CCCAGTACGC TTTCGGTCCT GGTGACTCAT CACAACAATA GTAACAATAG TAACAATAGT
  AACCCTAGGG GGCTGCAGAG ATGGCTCAGA GGTTGAGAGC ACTGACTGCT CTTCCAGAGG
  TCATGAGTTC AACTCCCAGC CACCACGTGC TGGCCCACAA CCATCTGCGA TGCATACAAT
  TCCCTCTTCT GGCGTGTCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373073471	MGP_WTSI_7_133838264	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239223809					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373073471	MGP_WTSI_7_133838264	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126293922 () rs orientation: forward

Symbol	Name	Function Class
Bola2	bolA family member 2	1250 bp upstream
Cpgi19704	CpG island 19704	1962 bp distal
Cpgi19705	CpG island 19705	589 bp proximal
Rr368435	regulatory region 368435	906 bp upstream
Rr400629	regulatory region 400629	1068 bp downstream
Rr400630	regulatory region 400630	483 bp upstream
Rr655564	regulatory region 655564	990 bp distal
Rr655565	regulatory region 655565	1299 bp distal
Rr655566	regulatory region 655566	1123 bp distal
Rr655567	regulatory region 655567	176 bp proximal
Rr655568	regulatory region 655568	196 bp proximal
Rr655569	regulatory region 655569	504 bp proximal
Rr655570	regulatory region 655570	1008 bp proximal
Rr655571	regulatory region 655571	1024 bp proximal
Rr655572	regulatory region 655572	1215 bp proximal
Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	within coordinates
Tssr69055	transcription start site region 69055	605 bp upstream
Tssr69056	transcription start site region 69056	1192 bp upstream
Tssr74794	transcription start site region 74794	964 bp downstream
Tssr74795	transcription start site region 74795	981 bp downstream