rs239231096 SNP Detail

Summary

• ID
  rs239231096
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:51370256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAATGAT TGTGACATTG
  GAGGCCATGA ATGAGCTAAG CATAAAATAG GTGATAGGTA AACAATATCT TTCTGTCATG
  CCTGATGTCA ACTGTTCCTA AGGACTGGAA ACATACCAGA AGATTTTGAT TGGAGTCCTG
  GTGTCATTCC TCCTGCTTTT CTTCCTCCTG CTTTTTCTCA TCCTCATCGG ATACCAGTAT
  S
  GGCACAAAAA GAAGGCTAGT AAGTAGAGCA TGAGTGCCTT GCATGTCTGG AGGTGTTGGG
  CAGAGAAAAC ATGTAGTCTC AAGACATGTA TAAATTTCAG AGATATTGCA ATATTTCCCA
  TCTCCTAGAG TATTAGTATA GTCATAGGAA GGAATTTAAC AGTCCCTTTC TTCCTCTTAA
  AGTTTCTATT GTTGGAGCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380379855	MGP_WTSI_10_51213966	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239231096					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379855	MGP_WTSI_10_51213966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51370256 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm40645	predicted gene, 40645			within coordinates
Gm49339	predicted gene, 49339			Coding-NonSynonymous
				Intron
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A			Coding-NonSynonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr93270	transcription start site region 93270			1419 bp downstream
Tssr93271	transcription start site region 93271			1301 bp downstream
Tssr93272	transcription start site region 93272			1246 bp downstream
Tssr93273	transcription start site region 93273			975 bp downstream
Tssr93274	transcription start site region 93274			442 bp downstream
Tssr93275	transcription start site region 93275			309 bp downstream
Tssr93276	transcription start site region 93276			255 bp downstream
Tssr93277	transcription start site region 93277			207 bp downstream
Tssr93278	transcription start site region 93278			171 bp downstream
Tssr93279	transcription start site region 93279			15 bp downstream
Tssr93280	transcription start site region 93280			421 bp upstream
Tssr93281	transcription start site region 93281			461 bp upstream
Tssr93282	transcription start site region 93282			485 bp upstream
Tssr93283	transcription start site region 93283			562 bp upstream
Tssr93284	transcription start site region 93284			896 bp upstream
Tssr93285	transcription start site region 93285			1121 bp upstream
Tssr93286	transcription start site region 93286			1235 bp upstream
Tssr93287	transcription start site region 93287			1597 bp upstream
Tssr93288	transcription start site region 93288			1857 bp upstream
Tssr93289	transcription start site region 93289			1925 bp upstream
Tssr97556	transcription start site region 97556			309 bp downstream
Tssr97557	transcription start site region 97557			674 bp downstream
Tssr97558	transcription start site region 97558			1861 bp downstream