rs239231947 SNP Detail

Summary

• ID
  rs239231947
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17769244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCCAACT ACATAAGTAG
  CAGAGTACTG AGCTATCTGG CATCAGTGAG AGAGGCCTTT GATCCTGTGG AGGTTTGATG
  CCCCAGAGTG GGGGAAGCTT GTGGGGTAAG GCAGGAGGGA GGATGTGGGT AAAGGAACAC
  CCTCTTAGAG GCAAAGCTGG AGGGATATGG AATGGGGGGG GGTTGCAGAG GGCAGACTGG
  R
  AAGGGGGACA ATATTTGAAA TGTAAATAAA AAATAACCAA TTAAAATTAA AAAGACTAGC
  TAGAACAACT GATGCCTTTT CAATGTGACA CACAAGCGTA TCACTATAAG CCATCTTTCT
  TTTTTATTCA TCCCAAAGAT CTCTCATTAA AATCAAAAAT TTAACATCCC ATAGTCTTGG
  GGGGGGGGGT TAGAGACAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320673577	CHEV_3_17615080	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239231947					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17769244 () rs orientation: forward

Symbol	Name	Function Class
Gm56811	predicted gene, 56811	within coordinates
Tssr32670	transcription start site region 32670	428 bp upstream