rs239234872 SNP Detail

Summary

• ID
  rs239234872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122533370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGATGCA ATCCCAGGAG
  GCACAGGCAG GCGGATCTTT GTAAGCTTGA GGTCAGCTTG GTCTACCTAG GGAGTCCCAG
  GTCAGCCAGG GCTGCTTGGA GTAGTGAGAG CCTGTCTCAA AAAGCTGACG TTGGGGGCAT
  TCAGTCAGTG AAACACTTGC CACTCAAGCA CGAGCACTTG AGTTCTGTCC CAGACTTCAC
  R
  AAAGTGGCCA GATGTGGTGG CATCTGTCTA TAAGCCTAGT GCTGGAGAGG CAAAGACAGG
  AGGATCTGTG GGGCTTGCTG GCGGCCTGTC TGTCCAGGTG GTGAGCTTCA GGTTCAATGA
  CAGCCCCTGT CCTGAATATA AAGGTGGAGA AGCAACTGAG GAGGTCACCT GATGATGACC
  TCTGACATGT GCACACATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366516950	MGP_WTSI_5_122845316	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239234872					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366516950	MGP_WTSI_5_122845316	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122533370 () rs orientation: forward

Symbol	Name	Function Class
Arpc3	actin related protein 2/3 complex, subunit 3	within coordinates
Gm32853	predicted gene, 32853	1996 bp upstream
Gm57265	predicted gene, 57265	498 bp downstream
Rr109028	regulatory region 109028	970 bp distal
Rr124311	regulatory region 124311	1230 bp proximal
Rr399328	regulatory region 399328	1092 bp downstream
Tssr48686	transcription start site region 48686	1440 bp upstream
Tssr48687	transcription start site region 48687	1531 bp upstream
Tssr53100	transcription start site region 53100	1583 bp downstream
Tssr53101	transcription start site region 53101	1706 bp downstream