rs239239796 SNP Detail

Summary

• ID
  rs239239796
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3307599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGCCTCT TTTTCTTCTG
  TTAGTTGAAG TATTACACTC CTCTGAAAAA GGAATGTATA CCACTAATTA CTTGATATCT
  CCTCATAACC ACGAAAATAT TTACTTCTTG TTATGAGAAA GAAGTACATT TAAATATTTC
  TATAAAAATT TAATTTTTAT TGACTAAAAT TTTTTCTTTT GCACTTAAAA TATCTTTAAA
  S
  AGTATTTCCC AAATTGGCCA GAGTGTTAAA ATTTAAATTC AGGTTCAAGA AATATTCTGA
  AATTATATAG GAATTGACTA ATGTTGTTGG CAGGTCACAT TAATCGTACC ACTTTGATTT
  TAATATTTAT AAAATTCTGA ATGTTAGTTT CAGATTTTAA AGATGAGGAT ACTGGGTTGC
  AAATAAAGCT CTTAAACTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392857625	MGP_WTSI_15_3228117	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239239796					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392857625	MGP_WTSI_15_3228117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3307599 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	1953 bp downstream
Rr498565	regulatory region 498565	506 bp distal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	1140 bp upstream
Tssr130395	transcription start site region 130395	922 bp downstream
Tssr130396	transcription start site region 130396	885 bp downstream
Tssr130397	transcription start site region 130397	1004 bp upstream
Tssr130398	transcription start site region 130398	1040 bp upstream
Tssr130399	transcription start site region 130399	1148 bp upstream
Tssr130400	transcription start site region 130400	1168 bp upstream
Tssr130401	transcription start site region 130401	1182 bp upstream
Tssr130402	transcription start site region 130402	1250 bp upstream
Tssr130403	transcription start site region 130403	1282 bp upstream
Tssr130404	transcription start site region 130404	1322 bp upstream
Tssr130405	transcription start site region 130405	1342 bp upstream
Tssr130406	transcription start site region 130406	1373 bp upstream
Tssr130407	transcription start site region 130407	1407 bp upstream
Tssr130408	transcription start site region 130408	1443 bp upstream
Tssr130409	transcription start site region 130409	1452 bp upstream
Tssr130410	transcription start site region 130410	1473 bp upstream
Tssr130411	transcription start site region 130411	1529 bp upstream
Tssr130412	transcription start site region 130412	1604 bp upstream
Tssr130413	transcription start site region 130413	1857 bp upstream
Tssr130414	transcription start site region 130414	1905 bp upstream
Tssr130415	transcription start site region 130415	1979 bp upstream
Tssr133563	transcription start site region 133563	1072 bp downstream
Tssr133564	transcription start site region 133564	1144 bp downstream
Tssr133565	transcription start site region 133565	1192 bp downstream
Tssr133566	transcription start site region 133566	1198 bp downstream
Tssr133567	transcription start site region 133567	1445 bp downstream
Tssr133568	transcription start site region 133568	1516 bp downstream