rs239240778 SNP Detail

Summary

• ID
  rs239240778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149984067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTATTTTTA TACTTATTTA AGAATTGAAA
  ACTTCTGAAA ATAAAGTTTG ATTGTTTCTT TATATCATGG CATTGATATC TCTGAGTCAT
  GATCCTTAAA CCATTATCTT ATGTCCTTTC ATCTACAATA AGAGTgaaat gtaccttact
  R
  gtagaacagt tgcctaatgc ttaggaggcc ctgggttcta gcttcaacac tgaacaagaa
  aaATCTAGGT TGTCCCTTAA TGAAATGGTT CTGCTCTTGC TTACATGGGT TCTAACAAGA
  GTCAGAACTT ATTACCTCAG TTGCTGAAGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320045558	CHEV_1_151955446	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239240778					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149984067 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	89 bp downstream
Tssr9287	transcription start site region 9287	1831 bp downstream
Tssr9288	transcription start site region 9288	1717 bp downstream
Tssr9289	transcription start site region 9289	1700 bp downstream
Tssr9290	transcription start site region 9290	1546 bp downstream
Tssr9291	transcription start site region 9291	1498 bp downstream
Tssr9292	transcription start site region 9292	1370 bp downstream
Tssr9293	transcription start site region 9293	1354 bp downstream
Tssr9294	transcription start site region 9294	1331 bp downstream
Tssr9295	transcription start site region 9295	1304 bp downstream
Tssr9296	transcription start site region 9296	1292 bp downstream
Tssr9297	transcription start site region 9297	1279 bp downstream
Tssr9298	transcription start site region 9298	1253 bp downstream
Tssr9299	transcription start site region 9299	1235 bp downstream
Tssr9300	transcription start site region 9300	1216 bp downstream
Tssr9301	transcription start site region 9301	1083 bp downstream
Tssr9302	transcription start site region 9302	1059 bp downstream
Tssr9303	transcription start site region 9303	983 bp downstream
Tssr9304	transcription start site region 9304	963 bp downstream
Tssr9305	transcription start site region 9305	954 bp downstream
Tssr9306	transcription start site region 9306	942 bp downstream
Tssr9307	transcription start site region 9307	916 bp downstream
Tssr9308	transcription start site region 9308	899 bp downstream
Tssr9309	transcription start site region 9309	877 bp downstream
Tssr9310	transcription start site region 9310	852 bp downstream
Tssr9311	transcription start site region 9311	829 bp downstream
Tssr9312	transcription start site region 9312	811 bp downstream
Tssr9313	transcription start site region 9313	803 bp downstream
Tssr9314	transcription start site region 9314	784 bp downstream
Tssr9315	transcription start site region 9315	692 bp downstream
Tssr9316	transcription start site region 9316	507 bp downstream
Tssr9317	transcription start site region 9317	221 bp downstream
Tssr9318	transcription start site region 9318	488 bp upstream