rs239246751 SNP Detail

Summary

• ID
  rs239246751
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92287456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAGCTCA CCACAGTCAC
  AGCCCATCTC TTTAACCTTT CTGTGTTTTG TCTGATGTTT GTCTGTCAGA GACACACAAA
  TTAAGAGCTG GCTTTGAAAT GAGACCTTGA TTTGAATCCA GGCTTCCAGG CTTGGTTGAC
  TTGGACAGAT CTGGGAAGGC TAATGCTTTC TAAGTAAAAA GTGCTGGCTC CTGTGGCTGT
  M
  ATGAGTCTTT AAAGTTGAGA AACATGAAAG TGCAGCCCTT AGTAGATGCT CAGGAAAGGA
  TGGACTTGAC TCTAGTAGGT TAGGCTGAGA TGATCCTTCG GCCTTGTCAC AGTGACCTCT
  GTGGAAGAGG TGATGCGTTC TTCAGCGTTA GAGGAATTTG AAGCTGAGGC TCCTGGAGCA
  GCGAGAGGTC AAGCCTCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365876694	MGP_WTSI_5_92568623	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239246751					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365876694	MGP_WTSI_5_92568623	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92287456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16052	CpG island 16052	954 bp distal
Gm15710	predicted gene 15710	697 bp downstream
Gm71614	predicted gene, 71614	1872 bp upstream
Rr399160	regulatory region 399160	1551 bp downstream
Rr614570	regulatory region 614570	1883 bp distal
Rr614572	regulatory region 614572	1641 bp distal
Rr614573	regulatory region 614573	900 bp distal
Tssr47284	transcription start site region 47284	1727 bp downstream
Tssr47285	transcription start site region 47285	1658 bp downstream
Tssr47286	transcription start site region 47286	1623 bp downstream
Tssr51846	transcription start site region 51846	1895 bp upstream
Tssr51847	transcription start site region 51847	1835 bp upstream
Tssr51848	transcription start site region 51848	1811 bp upstream
Tssr51849	transcription start site region 51849	1368 bp downstream
Uso1	USO1 vesicle docking factor	within coordinates