rs239253017 SNP Detail

Summary

• ID
  rs239253017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116513643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGAATA AACCCTTTCC
  TCCCCAACTT GCTTCTTGGT CATGATGTTT GTGCAGGAAT AGAAACCCTG ACTAAGACCC
  CCCACCTGAA TAAAAGAATT CCAAATTACC TCAATCGTAC ATTAAAAAGA TTTTATTCAG
  TGATCAGATT AGGAACATTC AGTGTTGCAA ATAAGTATAA TCATAGATTT AAAAAAATCA
  Y
  ATGATCAATA AGCAGGAAGT GAATAGATGT TTGCTGATAG AGGAAGGTAA GTCCTGAGGC
  AAGAGTCCTC TCGATTTATA TGTGTGACTT GGATGTGACT GAACTACATG ACTTCTAATT
  CCTTTGTCAA CTCTAAAAAG AGATGTGTAT GACCAGCCTT CTTTAGAAGT CTACTGAACT
  TAAACTCATA CCCAGTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323490230	CHEV_10_116114794	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239253017					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116513643 () rs orientation: forward

Symbol	Name	Function Class
Gm26579	predicted gene, 26579	within coordinates
Rr385348	regulatory region 385348	915 bp upstream
Rr439361	regulatory region 439361	255 bp proximal
Rr439362	regulatory region 439362	1253 bp proximal