rs239261305 SNP Detail

Summary

• ID
  rs239261305
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180596279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCCCCCT GATTAGGCAC
  TCTGGACCAG ACTCCCGAAG CAGCCCTCCC GAAGGCTTTT GTTCCTAGCT GTCGGGGGTT
  GGGGGGGGGT TGGGGGGGCA GGCGCTCCTC AGCACCTGTC CCCGCCAGCA GGGACGCTAC
  TCCCCAAGCA AACAGCGCAC CGTGACAGCT CCCCTTGCAC GCCACAAATC GGCTGCAGCA
  R
  CCACAGCCAA GTGCAAGCCG TCATCCCAGG AACCACCCGA GGCTGGTGCG GGTCCGGAAA
  GCCACGCAGG ACACCCGGAC TCACCAGCTG CAGAGCGCAG AGCGCAAGAA GCGTGCAGCG
  GCCGGAGCAA AAGCCCATGG TATTCACTTC GCCCGTGGGA GCCTTTGCTG CCAGAGTGGG
  CTGGAATCCT CCGCGTATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356770583	MGP_WTSI_2_180689191	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs239261305					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356770583	MGP_WTSI_2_180689191	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180596279 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12910	CpG island 12910	within coordinates
Gm14341	predicted gene 14341	within coordinates
Nkain4	Na+/K+ transporting ATPase interacting 4	Intron
Rr374382	regulatory region 374382	within coordinates
Rr572892	regulatory region 572892	within coordinates
Rr572893	regulatory region 572893	203 bp proximal
Rr572894	regulatory region 572894	852 bp proximal
Tssr28148	transcription start site region 28148	161 bp downstream
Tssr28149	transcription start site region 28149	190 bp downstream