rs239261540 SNP Detail

Summary

• ID
  rs239261540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:59522148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGGAGTAT TGGAAAACTT
  CCAGAGGCTC GCTTCCACTT GCTTTAGTTT GAGCCGGCGA TTTTCATTGC AACATTAACA
  GGAGTACAAC TAGATACAGG ATGGCCGGTC TGGGAGAGCG CGTAGCCCAG GACTGCTTCG
  CAGTGTGCTC TTCGTGAGCC GGACACCCCA TCTCTGGGCC ATTGAGAGCC CCACTGACTC
  Y
  TTTCATTCTC CTGCAGTTAA AAGTGGCATC TGGGTTTCCA ACAACTCACC TGAAAGCCCC
  CCTCCGCCCC CCCCCCCCCC CAACGTGAGC GCCCCACCTC TCCGTTTGCT GCTGCCACCT
  ACTGTCCACT CTCGTGAAAT CTCTGATGCG TGGTCAAGCA CAGAGAGAAA CTCTTTCTTC
  TTGGTGGATG AGAACAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394214977	MGP_WTSI_15_59481854	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239261540					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394214977	MGP_WTSI_15_59481854	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:59522148 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7127	CpG island 7127	454 bp distal
Gm56697	predicted gene, 56697	677 bp upstream
Rr311787	regulatory region 311787	within coordinates
Rr390806	regulatory region 390806	1118 bp upstream
Trib1	tribbles pseudokinase 1	within coordinates
Tssr4603	transcription start site region 4603	22 bp upstream
Tssr131384	transcription start site region 131384	1992 bp downstream
Tssr131385	transcription start site region 131385	1930 bp downstream
Tssr131386	transcription start site region 131386	1868 bp downstream
Tssr131387	transcription start site region 131387	1762 bp downstream
Tssr131388	transcription start site region 131388	1738 bp downstream
Tssr131389	transcription start site region 131389	1710 bp downstream
Tssr131390	transcription start site region 131390	1612 bp downstream
Tssr131391	transcription start site region 131391	1594 bp downstream
Tssr131392	transcription start site region 131392	425 bp upstream
Tssr134446	transcription start site region 134446	304 bp downstream