rs239267789 SNP Detail

Summary

• ID
  rs239267789
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122558152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTCCAA GTCCAGTAGC
  TTGGACTCAG TAGCTTGTTG AAGTACTGAG TTGTTTGTTT TGATTTACAG GAGCACAGGT
  GACTCGAAGG CAGCCACGTC TCATAAACGT CTCACCTAGC ATGGGTGGAT GAGGAATTTA
  TAAACATTGT ATCACTGGTA CCCAAGCCAC CTCCCACCTC CTGTACAGCC TGGCACTAAG
  M
  TCCTGGCAGC TGAGGCGGCT GAGCGAGGAG CGGTTGGAGT CTCTAGTGAG AGTCTGTGGT
  CGCCCCTTCC TTCTGCAGGA GAAAATGAAA AGACCCAATG TTGTAAGAGG CTATTAACAT
  TCTCCACTGT TCGCAATATA TAGCACTGTT CCTTCTTCAG GGCTGAAAGG GAAAGTATAT
  CCTCTGCGGA AGATTTAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376304078	MGP_WTSI_8_124355313	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239267789					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376304078	MGP_WTSI_8_124355313	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122558152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21206	CpG island 21206	1543 bp distal
Gm24283	predicted gene, 24283	871 bp downstream
Gm42047	predicted gene, 42047	1725 bp upstream
Gm64252	predicted gene, 64252	1098 bp downstream
Klhdc4	kelch domain containing 4	1844 bp upstream
Rr368654	regulatory region 368654	1697 bp downstream
Rr401186	regulatory region 401186	1191 bp upstream
Rr671929	regulatory region 671929	1719 bp distal
Rr671930	regulatory region 671930	1130 bp distal
Rr671931	regulatory region 671931	950 bp proximal
Rr671932	regulatory region 671932	1310 bp proximal
Tssr79828	transcription start site region 79828	1724 bp downstream
Tssr83245	transcription start site region 83245	1898 bp upstream
Tssr83246	transcription start site region 83246	1842 bp upstream