rs239273168 SNP Detail

Summary

• ID
  rs239273168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45649997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTTCATC TGTGGTGAAT
  CAGAGACAGG CAGCCGGGTC CTGGGATCAC AGCATTTTCC TTGAAACCTC CCAACTTCTT
  TCTACTAGGT CCCATGTTCT ACGTGTTCCA CCTCCTCCCT GCAGCACCAC GAGCTGCTGA
  CCAAGAGCTG CTGACCAAAG CTTTAAAATA TGAGCCTTGT CAGTAGTGAG GGTGGGCTAC
  Y
  AATGGGGACA ATCATGGCCC ATATCCGGAT GTCTACATAA GACACTCTTC AAAACAGTTT
  TTGTAATCAC TGTACTTCTT GCCCTTATTG GATAATGAAG GATGGCAGAT ATGCTACATT
  AAAGTATGCC ACTTGAGCAT CAATATTTTG CACCTAAAAG GCACTTGAAT AGAACTAAAT
  GCAAGAAGAG CCATCTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364763712	MGP_WTSI_5_45883894	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239273168					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364763712	MGP_WTSI_5_45883894	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45649997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15838	CpG island 15838	463 bp proximal
Gm71433	predicted gene, 71433	within coordinates
Lap3	leucine aminopeptidase 3	719 bp upstream
Rr399075	regulatory region 399075	481 bp upstream
Rr611067	regulatory region 611067	447 bp distal
Rr611068	regulatory region 611068	within coordinates
Rr611069	regulatory region 611069	564 bp proximal
Rr611070	regulatory region 611070	730 bp proximal
Tssr1476	transcription start site region 1476	719 bp upstream
Tssr46135	transcription start site region 46135	730 bp upstream
Tssr46136	transcription start site region 46136	794 bp upstream
Tssr46137	transcription start site region 46137	826 bp upstream