rs239275221 SNP Detail

Summary

• ID
  rs239275221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6950498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAACGCTG TGGCTTCTCT
  CCAAAAAAAT AGCATCGAGG GGGCTAAAGA GATGCTTCAG AAATTAAAAA CACTTGCTCT
  TGCAGAGGAC CCAGGTTCAA TTCCCAACAC CCACATAGTG GCTCACAAAC ACCTGTAATT
  CCAGTTCTAG GAAAGTCAAA ACCTTGTTCT GTCCTCCATA GTCTTGGGGT GGTACACGTA
  Y
  TGCATACACA TATACAAAGT GGTCATAACA TAAATTTGTA ACACATAAAA TAACAAAAAG
  TAGCATAAAA GAGAAGCCTA GTGGTGCAGG CCTTTAATCC CAGCACTTGG GAGGCAGAGG
  CAGGCAGATT TTTGAGTTCG AGGCCAGCCT GGTCTACAGA GTGAGTTCCA GGACAGCCAG
  AACGATACAG AGAAACCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401683876	MGP_WTSI_19_7047620	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239275221					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401683876	MGP_WTSI_19_7047620	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6950498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10537	CpG island 10537	1092 bp proximal
Plcb3	phospholipase C, beta 3	within coordinates
Ppp1r14b	protein phosphatase 1, regulatory inhibitor subunit 14B	1918 bp upstream
Rr543521	regulatory region 543521	1160 bp distal
Rr543522	regulatory region 543522	1348 bp proximal
Tssr154704	transcription start site region 154704	1483 bp upstream
Tssr154705	transcription start site region 154705	1821 bp upstream
Tssr154706	transcription start site region 154706	1918 bp upstream
Tssr154707	transcription start site region 154707	1946 bp upstream
Tssr154708	transcription start site region 154708	1981 bp upstream
Tssr154709	transcription start site region 154709	1992 bp upstream