rs239278365 SNP Detail

Summary

• ID
  rs239278365
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150698929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAGATAC ATGACTAGAC
  TAGAGAACCC AAAGTTCTGT GCCTGTGGCA TAGTTACTAT CTCTTCAGAA AACCAGCAAG
  CAAAACTGGG CACTGTGTCT AATGAACCTC GTAGAATCTA GTGAGGAGAA AAAAAAAAAT
  CCAACCCAGA TCTTTGCTGG CACTTAACTC TGTGCCAAGC AGCAGGACCA CAGCCCTAGG
  S
  TACCTAGGCC TAGGCTTAGG TCAGTTCTAA GGGCTCTACC AATAAATTAC AGTCCTTGGG
  TCTTCATGCT TGCAAATCCC AGCTTCTTGT CTGTACTTTC TTTAAGGGGA CACTAAATCT
  GAAAAACAAC ACTGCCTTGT TTTTTTTTGT ATGATTTTGT TTCTTCTTAA GTTTATTCCT
  TACAAGTTAC CAAACTTAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356125169	MGP_WTSI_2_150682745	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239278365					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356125169	MGP_WTSI_2_150682745	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150698929 () rs orientation: forward

Symbol	Name	Function Class
Abhd12	abhydrolase domain containing 12	within coordinates
Tssr26719	transcription start site region 26719	1308 bp upstream
Tssr26720	transcription start site region 26720	1289 bp upstream
Tssr26721	transcription start site region 26721	1235 bp upstream
Tssr26722	transcription start site region 26722	1161 bp upstream
Tssr26723	transcription start site region 26723	1063 bp upstream
Tssr26724	transcription start site region 26724	979 bp upstream
Tssr26725	transcription start site region 26725	939 bp upstream
Tssr26726	transcription start site region 26726	880 bp upstream
Tssr26727	transcription start site region 26727	848 bp upstream
Tssr26728	transcription start site region 26728	1818 bp downstream
Tssr26729	transcription start site region 26729	1864 bp downstream