rs239280592 SNP Detail

Summary

• ID
  rs239280592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79519713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAAGGGA CAAGATGAGG
  ACCGGGTGGA TGCACAAATC CCAGCCAATC TAGGGTCCCT AGTGTAGGGC CATGGTAGAT
  ATTTGTTTGT GTGTCTTCTT CCTTGCCTCC CACCTGGATG TGGTCTGAAT TAAGAAATAT
  CTGGATGCTC TTAGCACCTT GTCTCCTGTA TTTGCTGGGA GGGGCAGTGG GAACTGCCAG
  R
  AGGACAAGTT CTGTTCAGAG CAGGGTCACC TGACCTGTTC CTCATCTGTA AAGGGATTGT
  GGGTAGAGTC TCCTAGACTC ACATAATTCT TGAGATAGCT TAGGATGCTC GGCAAGATGT
  CAATCAAGTC TGTCAGCGTG GGAGCCTCCT GTATGGTGTG GGTGGCTGAG ACATGGGGAG
  ACTCTGTAAG GGGGCAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381007711	MGP_WTSI_10_79146624	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239280592					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381007711	MGP_WTSI_10_79146624	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79519713 () rs orientation: forward

Symbol	Name	Function Class
Cdc34	cell division cycle 34	within coordinates
Cpgi1800	CpG island 1800	1023 bp distal
Rr402019	regulatory region 402019	1924 bp downstream
Rr434868	regulatory region 434868	1465 bp distal
Rr434869	regulatory region 434869	within coordinates
Rr434870	regulatory region 434870	366 bp distal
Tssr94368	transcription start site region 94368	1718 bp downstream
Tssr94369	transcription start site region 94369	1649 bp downstream
Tssr94370	transcription start site region 94370	1632 bp downstream
Tssr94371	transcription start site region 94371	1557 bp downstream
Tssr94372	transcription start site region 94372	1471 bp downstream