rs239286559 SNP Detail

Summary

• ID
  rs239286559
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83007725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGGAGTG ACATCAACCA ATGAAACCGG
  GGTTCTCCAA AACTGAAATC GGGACCTAGA GAGGATGAAA CAGTGCAATC CACTAAGGTC
  GGTCAAGACA AAAGCCGAGA GCAACCACAG GCACTGTAGC TCATCCCTCA AATCCAAGTG
  S
  TGAGAAGGAC TTCTGGAGAC AGCCACCACT CCCACTGCTG TGGGTGTCTC AAGCTTTTGC
  CTTACTTCCT CTGGCCCGCA AGTGTCCACA GCACAGCTAG CTCACAGCTA GCTCGCAGTT
  GACTTCAAGC AGCTGAGGGA ACGTGCTCAG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323766846	CHEV_11_82930401	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239286559					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83007725 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	within coordinates
LxMm-9c11	LINE repeat x, subfamily 9, member c11	1188 bp distal
Rr237031	regulatory region 237031	1325 bp distal
Rr247350	regulatory region 247350	within coordinates
Slfn1	schlafen 1	within coordinates
Tssr103652	transcription start site region 103652	210 bp downstream
Tssr103653	transcription start site region 103653	102 bp downstream
Tssr103654	transcription start site region 103654	49 bp downstream
Tssr103655	transcription start site region 103655	17 bp downstream
Tssr103656	transcription start site region 103656	14 bp upstream
Tssr103657	transcription start site region 103657	53 bp upstream
Tssr103658	transcription start site region 103658	75 bp upstream
Tssr103659	transcription start site region 103659	104 bp upstream
Tssr103660	transcription start site region 103660	1430 bp upstream
Tssr109644	transcription start site region 109644	307 bp upstream