rs239286867 SNP Detail

Summary

• ID
  rs239286867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80640564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTCATC CTCAGGCTCC
  AGGGGTACAC CCACCTGCTC CTGCAGTACA CCCTCAAGCC CCTGGGGTAC ACCCCCCAGC
  CCCTGGGATC CACCCTCAGG CACCAGGGGT TCACCCTCAG CCGCCTCCTG GAGTCCACCC
  TGCTGCCCCG GGGGTCCACC CTCAGCCTCC AGGGGTTCAC CCCTCAAATC CTGGGGTGCA
  Y
  CCTGCTCCTA TGCCCCCCAT GCTGAGGCCC CCACTCCCCT CAGATGGCCC TGGGAACATG
  CCTCCCCCTC CCCCAGGCAA CTGAGCAGTC CCCCCACCAG CCTCTGTTGT CTGTGTGGTC
  TTTTCCCATT GCCAGTCCTT GGAAGGTTTT CTATTTGTCC TGCCTTGAGC CTATTAAACA
  GCCTCCCCCG TGTCTCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381025286	MGP_WTSI_10_80267475	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239286867					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381025286	MGP_WTSI_10_80267475	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80640564 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	513 bp upstream
Cpgi1909	CpG island 1909	1648 bp proximal
Rr366747	regulatory region 366747	221 bp upstream
Rr435397	regulatory region 435397	62 bp distal
Rr435398	regulatory region 435398	1331 bp proximal
Sf3a2	splicing factor 3a, subunit 2	within coordinates
Tssr94613	transcription start site region 94613	1908 bp downstream
Tssr94614	transcription start site region 94614	1438 bp downstream
Tssr94615	transcription start site region 94615	1113 bp downstream
Tssr94616	transcription start site region 94616	1070 bp downstream
Tssr94617	transcription start site region 94617	1048 bp downstream
Tssr94618	transcription start site region 94618	667 bp downstream
Tssr94619	transcription start site region 94619	640 bp downstream
Tssr94620	transcription start site region 94620	612 bp downstream
Tssr94621	transcription start site region 94621	580 bp downstream
Tssr94622	transcription start site region 94622	503 bp downstream
Tssr94623	transcription start site region 94623	within coordinates
Tssr94624	transcription start site region 94624	503 bp upstream
Tssr94625	transcription start site region 94625	1398 bp upstream
Tssr94626	transcription start site region 94626	1669 bp upstream
Tssr98515	transcription start site region 98515	659 bp upstream